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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs7875439 chr9:94687772 G/A 5.39E-8 485 16.02 16.37 16.48 KM Plot
THCA rs78786332 chr16:21047284 G/A 9.13E-7 474 16.23 14.9 27.1 KM Plot
THCA rs78790313 chr16:2956228 A/G 0.000174 484 15.47 16.83 15.4 KM Plot
THCA rs78807053 chr14:24740272 G/A 1.21E-6 484 15.93 15.63 17.13 KM Plot
THCA rs78810480 chr2:48058642 T/C 1.14E-7 487 15.3 17.93 8.27 KM Plot
THCA rs78854909 chr2:48097827 G/T 4.85E-8 490 15.23 19.47 8.27 KM Plot
THCA rs78880876 chr11:57133008 A/G 0.000298 487 16.02 15.9 17.63 KM Plot
THCA rs78888036 chr2:48035823 G/C 1.36E-7 485 15.32 18.33 8.27 KM Plot
THCA rs78893207 chr10:104796138 T/C 5.02E-9 490 15.23 17.68 32.1 KM Plot
THCA rs78932312 chr6:26194869 A/G 2.21E-8 490 15.63 16.8 4.75 KM Plot
THCA rs7893241 chr10:81954338 C/T 0.000221 490 15.67 16.37 9.77 KM Plot
THCA rs78938123 chr13:108849329 A/G 5.54E-9 483 15.7 17.4 14.22 KM Plot
THCA rs78941724 chr2:48052196 T/C 1.08E-7 488 15.32 17.93 8.27 KM Plot
THCA rs78966550 chr1:220703104 C/T 2.65E-5 484 15.87 16.93 17.17 KM Plot
THCA rs78993478 chr6:24422082 A/G 5.55E-15 488 16.37 14.85 11.07 KM Plot